![wiki:hisat2build [Computational biology at CSU]](https://rna.colostate.edu/2020/lib/exe/fetch.php?w=600&tok=3f7798&media=wiki:screen_shot_2018-11-15_at_3.49.44_am.png "wiki:hisat2build [Computational biology at CSU]")
wiki:hisat2build [Computational biology at CSU]
Directional/stranded RNA-seq data -which parameters to choose?
Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients | Scientific Data
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown | Nature Protocols
StringTie
RNASeq Analysis With the Command Line
Compile and Software installation (II) – BCH709 Introduction to Bioinformatics
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
hisat2-stringtie_wf_se.cwl - Common Workflow Language Viewer
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
User manual | DEWE
Compile and Software installation (II) – BCH709 Introduction to Bioinformatics
Biotechvana
StringTie
03 From fastq files to alignments – Introduction to RNA-seq
Bioinformatics Analysis of Omics Data with the Shell & R | R-bloggers
Alignment | Griffith Lab
Biotechvana
hisat2-stringtie_wf_se.cwl - Common Workflow Language Viewer
User manual | DEWE
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
Manual
manual issue: does hisat2 support on the fly passing of --ss and --exon? · Issue #34 · gpertea/stringtie · GitHub
BIRCH Tutorial - Differential Expression
Manual | HISAT2
Getting started with HISAT, StringTie, and Ballgown - Dave Tang's blog
No-mixed behaviour HISAT2 - hisat2 - Galaxy Community Help
