Fast, scalable and accurate differential expression analysis for single cells | bioRxiv
Current best practices in single‐cell RNA‐seq analysis: a tutorial | Molecular Systems Biology
Discrete distributional differential expression (D3E)--a tool for gene expression analysis of single-cell RNA-seq data.
Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells - ScienceDirect
How to Get Started with Single Cell RNA Sequencing Data Analysis | American Society of Nephrology
Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies | Nature Communications
Confronting false discoveries in single-cell differential expression | bioRxiv
Frontiers | Single-Cell RNA-Sequencing: Assessment of Differential Expression Analysis Methods
Single-cell RNA-sequencing of peripheral blood mononuclear cells reveals widespread, context-specific gene expression regulation upon pathogenic exposure | Nature Communications
IDEAS: individual level differential expression analysis for single-cell RNA -seq data | Genome Biology | Full Text
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression | Nature Communications
Confronting false discoveries in single-cell differential expression | Nature Communications
scDD – A statistical approach for identifying differential distributions in single-cell RNA-seq experiments | RNA-Seq Blog
Monocle
Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data | BMC Bioinformatics | Full Text
JCI Insight - Single-cell RNA-Seq of human esophageal epithelium in homeostasis and allergic inflammation
Single-cell RNA-seq: Pseudobulk differential expression analysis | Introduction to single-cell RNA-seq
Co-expression in Single-Cell Analysis: Saving Grace or Original Sin?: Trends in Genetics
Defining cell identity beyond the premise of differential gene expression | Cell Regeneration | Full Text
Single cell RNA sequencing – NGS Analysis
The Maze of Differential Gene Expression Analysis in Single-cell RNA-Seq - BioTuring's Blog
Single-Cell RNA Sequencing to Disentangle the Blood System | Arteriosclerosis, Thrombosis, and Vascular Biology
Venice: a non-parametric test for finding marker genes in single-cell RNA- seq data - BioTuring's Blog
JCI Insight - Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome
A statistical approach for identifying differential distributions in single-cell RNA-seq experiments | RNA-Seq Blog
